rs27314340 SNP Detail

Summary

• ID
  rs27314340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGTTA GGATAGCTAT
  TAGCTGCCAT GTGAGTTCTG GGAACTTAAC CAGGGTCTTC TGCAAGAGTA ACAGGACCCT
  TAACTGTCGA GCTATCCCTC CAGCCCCTAG TTTTATTTTT ATTGTCTGTA TTTGGGGGGG
  GGGGGGGGAA TTGTGCATGT GAGTGCAGTG CTTGCAGAGG CCAGCAGAGG GCATCAGATC
  Y
  TCTAGAGCAG GAGCTTCTGG AACAAGTCAG AGTTCAGAGT CACCTAATCT ATCCTGAGCA
  CAGCTAGAGA AGCCAAAAGA AGCTGGCGTG TGTAAACTTG GAATAGATCT TTCACCTCTG
  GGGTCCAGCT GAGGCCCATT TCTAGTTTCC CACTAGGGAC TCATAAGGGG CCCAGAGACT
  GACTGGTTTG GCTAAGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513760	NES08883009	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27314340					SNP	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513760	NES08883009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	647 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1075 bp upstream
Rr569954	regulatory region 569954	3 bp distal
Rr569955	regulatory region 569955	585 bp proximal
Rr569956	regulatory region 569956	1086 bp proximal
Rr569957	regulatory region 569957	1257 bp proximal
Rr569958	regulatory region 569958	1434 bp proximal
Tssr21727	transcription start site region 21727	1052 bp upstream