rs27310116 SNP Detail

Summary

• ID
  rs27310116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147631386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTGCCC AAATTTGGAG
  CCAGGAAAGA ATGAGGAAGA AGGAAAAACC ATGATGGGAA ATGATCCAAA ACATGCTCAG
  AATATATGAA ATGAGAGGTT TTTGCAAGCC AGTTGTTATC TTTTGACTCC AGGGAACTTG
  GTGAGGGGAC ACCGCCATTC CTGGCAGGGA CCTCACTGAG AAAAACTACT GGAGCCAGTG
  M
  GCCACCCAGT GGTCCTTTTA TGCACTGCAG GTTACTTGAC AAAAGCAATA AGAAATTCCC
  CTTAGTAAGC AAACGTTTTT ATTAAACGGT GAGTCTGGTA AGCTTCTGTT TTGTTTTGCT
  TTGCTTTGTT TTAACTTTTT ATTGTTTCTT TGTGAATTTC ATGTCATGAA CCCCAATCTC
  TCTTATCTCC CCCTCCCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37494736	NES08935410	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27310116					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37494736	NES08935410	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147631386 () rs orientation: forward

Symbol	Name	Function Class
Gm75654	predicted gene, 75654	within coordinates
Rr566812	regulatory region 566812	within coordinates