rs27308942 SNP Detail

Summary

• ID
  rs27308942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157889107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGACAGA TAACTGTACT
  TGCATACAGT GGAAGAAGTA CTGGTGAGGC TGTCATGCCA GAGAGTTGTT TAACCTCCCT
  GGGTCTTTTT CCTCTTGTAA TGTAATGCTC TGTCAAAATT GTTGGAAAGA TGAAGGTAAA
  GAAACCATTG CAATGCCCTG CACATACTTG GTGTCCAATA TTTCTGTTAA ATGCAGATTT
  R
  TCATTTAGAT TTATTTCCCT CAATTGTTTT TCTTGTTTTG TGTTGCCCAA TGTGATGCAA
  TAGAAATGAT TTTAGAATTA ACACATCTAT CATAATCATA TAAAAGCACA GGGGACAGAT
  AATAAAGAAT GCAACTTGCC AGGCTCAAAA GTAGTTAATT CTAGAATGGA ATTGTAAATA
  ATTTCTTCCA GTGGTACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37544463	NES08898079	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27308942					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544463	NES08898079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157889107 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			700 bp proximal
Rr568630	regulatory region 568630			893 bp proximal
Rr568631	regulatory region 568631			1206 bp proximal