rs27308938 SNP Detail

Summary

• ID
  rs27308938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157889733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCGTCT TACCATCCTA
  ATGTTTACTT CTTTTGAAGG GAAGAAGGTT CTAATTATGA TAATTGGGGC ATACCACTTC
  CAGTAGCATT TCCTTGGACT CAAAGTTTGG GAACTTTTTG TCTCTTCAGT AACATAAGGA
  GCTATACCAA TTTAAAATAA CTGGCAAGAC AGTTAGCATG AAGCCATTTC TGAAAATGAA
  Y
  ACTCCCTTTC CCCTCGGTGT TTGCCTGTGG TCATTGTGCA GAGCACTGGA TGCTTATGTA
  AGTAGGACAT GCAGCTCACA CTTGTCTCTT TATTTTCCCT AGCAGCAGAA GAGAAGAAGT
  CTCTAAAACG AACTTTTCAG CAGATACAAG AGGAGGAAGA TGATGACTAC CCTGGAAGCT
  ACTCTCCCCA AGACCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37544459	NES08898083	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27308938					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544459	NES08898083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157889733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			74 bp proximal
Rr568630	regulatory region 568630			267 bp proximal
Rr568631	regulatory region 568631			580 bp proximal