rs27308937 SNP Detail

Summary

• ID
  rs27308937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157890028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTAGCA GCAGAAGAGA
  AGAAGTCTCT AAAACGAACT TTTCAGCAGA TACAAGAGGA GGAAGATGAT GACTACCCTG
  GAAGCTACTC TCCCCAAGAC CCTTCTGCAG GCCCTCTCTT GGTATGTGAT GCCAGGCACA
  AAGTGACTCC AGGTGGCCTT TAGCTGAAGA TCATGACCAC AAGGTGGTGC TGTTACCAGT
  R
  GTGTGGCTTA TCAAAGGGCA GCAGATGCAG TAGCGCACTC AGAGATTCCC AGACACCTGA
  CTTCACCCTG CCTTTTACAC CTCCACTTTA CAATGGGTTA ATGTTTATAA AATGTTCGGA
  CTTGACTTTG TCTTTTAAAA GTTAAAAATA CTCTAAAAGT AGATTTAAGG ATATAATAAA
  GATGTTCTGA GGCATTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37544458	NES08898084	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		A	G	G	A	A	G	A	G
ss45351026	mCV25108882	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss148108699	ENSMUSSNP1387658	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27308937					SNP	A	G	G	G	G	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544458	NES08898084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157890028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			within coordinates
Rr568630	regulatory region 568630			7 bp distal
Rr568631	regulatory region 568631			285 bp proximal