rs27308932 SNP Detail

Summary

• ID
  rs27308932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157891645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACTCAG AAATCCGCCT
  GCCTCTGCCT CCCAAGTGCT GGTTTGTAAA ACCCTTTTGA TAGACACAGG ATATGCTTTT
  CTTGTCTTTA ACTCTTAATG AGTTAATTTA TTTGACATTT TAATATTGGC AGGGATTTTT
  ATTTTGTAAA ACAAACTCTA GAAAGAATTT AATCAGCCAG CACAGCTGTT CAGCATCTGG
  Y
  ATTTGTGCCT TTTTTTCTAT ATTATAGACT TTTATACTGT AAATAGTGTT TCATTTGAAA
  TTAAGCAGTA TGGACTAGAA TCTGTATTCT TAAGTTGCCA AAAATGTGCT CTTTAATTTT
  TTTTTTTAAA CAGAATTCTG TAGAGGTTTA TTTATGTGTT TGTAGACTTA AAATAATTTT
  ATGTCATTTA GAATCCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37544453	NES08897990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27308932					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544453	NES08897990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157891645 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			1514 bp distal
Rr568630	regulatory region 568630			1624 bp distal
Rr568631	regulatory region 568631			1311 bp distal