rs27308066 SNP Detail

Summary

• ID
  rs27308066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156954920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTAATCAA AATTATTTTG GATTCCAAGA TGGTGACAGT
  CTCTAGAAAG TTCCAAAGCA GAGATAGGAA ACTTTTCAAC GAGGAAGCTG CCTTAAATAC
  R
  AACACTACAG GCTTTGGATC TACCAGCTTG CAGAAGGCTG GTCAGGGCCT GGAGGATATA
  CTGAAGGACA CAGGGGGTGT AACTGAGCCA GGCAAGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547486	NES08893790	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	G	A		G	A	A	G		A
ss45329798	mCV23693522	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss148092119	ENSMUSSNP7135106	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
ss320584228	CHEV_2_156938736	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308066					SNP	A	A	A	G	A	G	A	A	G	G	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547486	NES08893790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156954920 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1939 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1300 bp upstream
Tssr27140	transcription start site region 27140	465 bp upstream
Tssr27141	transcription start site region 27141	136 bp upstream
Tssr27142	transcription start site region 27142	402 bp downstream
Tssr27143	transcription start site region 27143	1277 bp downstream