rs27308065 SNP Detail

Summary

• ID
  rs27308065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATACAAAC ACTACAGGCT TTGGATCTAC CAGCTTGCAG
  AAGGCTGGTC AGGGCCTGGA GGATATACTG AAGGACACAG GGGGTGTAAC TGAGCCAGGC
  R
  AGTCAGTGGG AAATGTCCTG GAAGAATGTG AGGGGAGTGG CTAGAGAATA AAGGACTGGA
  GAGCCATCAC CAGGGACAGT GTGGGTGCTG GGTTATGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547485	NES08893791	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	G	A	G		G	A	A	G		A
ss45205344	mCV23693523	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss148092125	ENSMUSSNP5764964	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320584229	CHEV_2_156938830	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308065					SNP	A	A	A	G	A	G	A	A	G	G	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547485	NES08893791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955014 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1845 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1394 bp upstream
Tssr27140	transcription start site region 27140	559 bp upstream
Tssr27141	transcription start site region 27141	230 bp upstream
Tssr27142	transcription start site region 27142	308 bp downstream
Tssr27143	transcription start site region 27143	1183 bp downstream