rs27308064 SNP Detail

Summary

• ID
  rs27308064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAGGACA CAGGGGGTGT AACTGAGCCA GGCAAGTCAG
  TGGGAAATGT CCTGGAAGAA TGTGAGGGGA GTGGCTAGAG AATAAAGGAC TGGAGAGCCA
  K
  CACCAGGGAC AGTGTGGGTG CTGGGTTATG AACTGTAAAC TAACAGCAAC AAGGCAGTTA
  TCAAACAGCT AGGGGATTTT AAATCCTGAC CATGTATTAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547484	NES08893792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308064					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547484	NES08893792	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955081 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1778 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1461 bp upstream
Tssr27140	transcription start site region 27140	626 bp upstream
Tssr27141	transcription start site region 27141	297 bp upstream
Tssr27142	transcription start site region 27142	241 bp downstream
Tssr27143	transcription start site region 27143	1116 bp downstream