rs27308063 SNP Detail

Summary

• ID
  rs27308063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAAGGAC TACAAAGTGA AACTCTGTCT CAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAATCTT CAAGCAATTG CAGAGTGCTT TTAGGTTTAA
  S
  AGAGACACTT TATTTACAGA GCCACACAGA TAGGTTTTTC GATGAGATGC TATGTAGTCT
  GAGATTTACT TTAAGATGAT GGGAGATCTC TCAGGTGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547483	NES08893737	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	C	G		G	C	C	G		C
ss320584233	CHEV_2_156939211	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308063					SNP	C	C	G	C	G	C	C	C	G	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547483	NES08893737	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955395 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1464 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1775 bp upstream
Tssr27140	transcription start site region 27140	940 bp upstream
Tssr27141	transcription start site region 27141	611 bp upstream
Tssr27142	transcription start site region 27142	70 bp upstream
Tssr27143	transcription start site region 27143	802 bp downstream