rs27308062 SNP Detail

Summary

• ID
  rs27308062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCTGAG TTTGAGACCG
  GTCTGAATTA CACAGCAAGA TCCAGACAGC AAGGACTACA AAGTGAAACT CTGTCTCAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AATCTTCAAG CAATTGCAGA GTGCTTTTAG
  GTTTAACAGA GACACTTTAT TTACAGAGCC ACACAGATAG GTTTTTCGAT GAGATGCTAT
  R
  TAGTCTGAGA TTTACTTTAA GATGATGGGA GATCTCTCAG GTGGCGAAGA CAGGCAGATC
  ACTGGTCTGC ACAGTGAGAC CTTGTCTCAA AACCATAATA AAATTGTAAG TGCAGAATAA
  ACAAACAAAC AAAAAGACTA GGCATGTGAG CCAGGCAGTG GTGGCAGGTG GATTTTTATG
  AGTCTAAGGA CAACCTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37547482	NES08893739	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27308062					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547482	NES08893739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955449 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1410 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1829 bp upstream
Tssr27140	transcription start site region 27140	994 bp upstream
Tssr27141	transcription start site region 27141	665 bp upstream
Tssr27142	transcription start site region 27142	124 bp upstream
Tssr27143	transcription start site region 27143	748 bp downstream