rs27308061 SNP Detail

Summary

• ID
  rs27308061
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156955591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCGAAGAC AGGCAGATCA CTGGTCTGCA CAGTGAGACC
  TTGTCTCAAA ACCATAATAA AATTGTAAGT GCAGAATAAA CAAACAAACA AAAAGACTAG
  S
  CATGTGAGCC AGGCAGTGGT GGCAGGTGGA TTTTTATGAG TCTAAGGACA ACCTGGTCTA
  CGTAGTGAGT TCAAGGCCAG CCAAGCCACA TGCTGAGAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547481	NES08893743	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G	G	C		G	G	C		G
ss320584234	CHEV_2_156939407	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308061					SNP	G	G	C	G	C	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547481	NES08893743	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156955591 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1268 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27139	transcription start site region 27139	1971 bp upstream
Tssr27140	transcription start site region 27140	1136 bp upstream
Tssr27141	transcription start site region 27141	807 bp upstream
Tssr27142	transcription start site region 27142	266 bp upstream
Tssr27143	transcription start site region 27143	606 bp downstream