rs27308045 SNP Detail

Summary

• ID
  rs27308045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGAAATG ATCCTATAAC TATTTTGAAT TGGCTCAACT
  ATGAACAGAT ATCTGTTCAT AATTAACAGA TATCTTATCA ACGTATGTTA TCTTGATGAT
  M
  TGTTTTCTGT TTTGAGTAAA GGTCTCATTA CATGACCCAC ATTGACCTAA ACTCACTACA
  CAGCGTGGCC TGGAGCTTGC AATTGACTCC TTGTGGCCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37547465	NES08893523	PERLEGEN	MM_PANEL2	f	SNP		A	C	C	C		C		C		A	A	C		A
ss148092335	ENSMUSSNP4913975	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				C				C
ss320584279	CHEV_2_156943184	CHEVERUD	SCREENING_POP	f	SNP								C						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27308045					SNP	A	A	C	C	C	C	C	C	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37547465	NES08893523	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959368 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	164 bp distal
Rr568437	regulatory region 568437	300 bp distal
Rr568438	regulatory region 568438	80 bp proximal
Rr568439	regulatory region 568439	1583 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron