rs27304685 SNP Detail

Summary

• ID
  rs27304685
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159427808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACAGCCA TAAAGGGGAA
  TATATGAGAC CAGAGAGGTA TGCAAGGAGA CCTACAGAGC ATAAAGGGGT TAGATCTGTC
  TATTGGAGGT GGGCAGGATA AGTTGATGAA GAAAGCTAAA CAGAATTGCT GTGACATGCC
  ATAAGTTTGG AACATGAATT CGATGCACTT AAGGGAGATG TAAATGAAAG ATGCTGGAAA
  Y
  TAAAGAACAG TATACATACA GTAAAGATAC AGAGAGAGAC ACATATGCCT GGCAGTGGAC
  CAGTATGGGA AATATCTGAG AAAGAAGTTC CCTCTGTTTG TAATTTACAA ATCAGTTCAG
  TGACATCCTG GCCGCAGCCC GTGTTATGTG GGCTCTAAGG TACCCTTAGT GACCTTTCAG
  TTCTTTGTTA CCACTGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37537405	NES08887187	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27304685					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537405	NES08887187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159427808 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	539 bp proximal
Rr568924	regulatory region 568924	862 bp proximal
Rr568925	regulatory region 568925	912 bp proximal
Rr568926	regulatory region 568926	1291 bp proximal