rs27304683 SNP Detail

Summary

• ID
  rs27304683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159428437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAACTCA AATCCCAGCA
  CCCCAGAATA TGATAATATT TGGAAACACA GCCATGACTG ATGTCATTAG CTAAGATACA
  CAGCCATGGC TGATGTCATT AGCTAAGATG AGGTCATTAG GGCTGTCTTC CAGTCTGTTT
  GTGTATGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCACTATTAG GCTTTATCTC
  R
  TAGTTGTGAG TGTTCTACTT GCTCCCTAGG TCCCAGAGGA AGAAAAGCCT TAAGGCAAAG
  GAGTGTAATG CCCTGGAGTA GAAAGGTTAT CTCCAGCAAA AGAGCTTGAC TAGTCCTCAG
  GCTCTTCTTC CCCTGACTGG CATGCTACTG GGCTCCTGGT GCCTACTTTA GAAATCAAGA
  ATGGCCTTAT TTTACTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss37537403	NES08887114	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	G
ss45287696	mCV22919334	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss148134167	ENSMUSSNP2881028	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs27304683					SNP	A	A	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537403	NES08887114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159428437 () rs orientation: forward

Symbol	Name	Function Class
Rr568924	regulatory region 568924	233 bp proximal
Rr568925	regulatory region 568925	283 bp proximal
Rr568926	regulatory region 568926	662 bp proximal