rs27304680 SNP Detail

Summary

• ID
  rs27304680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159428518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATGGCT GATGTCATTA
  GCTAAGATGA GGTCATTAGG GCTGTCTTCC AGTCTGTTTG TGTATGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG CACTATTAGG CTTTATCTCG TAGTTGTGAG TGTTCTACTT
  GCTCCCTAGG TCCCAGAGGA AGAAAAGCCT TAAGGCAAAG GAGTGTAATG CCCTGGAGTA
  R
  AAAGGTTATC TCCAGCAAAA GAGCTTGACT AGTCCTCAGG CTCTTCTTCC CCTGACTGGC
  ATGCTACTGG GCTCCTGGTG CCTACTTTAG AAATCAAGAA TGGCCTTATT TTACTTTAAG
  CAAAATCACA TGGCATACAT GGCCAGGAAT GGTGGCCAGA AGATGGAGAA AACCTCACTG
  TTTACCAGAC CCCTGAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37537400	NES08887145	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27304680					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537400	NES08887145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159428518 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	68 bp distal
Rr568924	regulatory region 568924	152 bp proximal
Rr568925	regulatory region 568925	202 bp proximal
Rr568926	regulatory region 568926	581 bp proximal