rs27304673 SNP Detail

Summary

• ID
  rs27304673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159429545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAAAGC AGCAGCTGTC
  TGAAGGATGT GGGTGACAGA TTTGAACAAA CCCCTGTTGC TTTCTCTTGT AAACAGTGTA
  TTCCTGTGAG GGATCTTGGG TAGATGCATC CCTCCCTCCT AGTGCACCTT GGGTCTGATT
  TGTTGTTGTC TGTGAGACCA GGAACCCCAT GGATATGACA GAGAGCTACC TGCTCCTGAG
  Y
  CTGAGCCTCC GACTGGATCC CCACCAGGGC TCTGTCCTTG ATATCTGTCT GGCAGAGTTA
  GCCTTTCTCT GAGAAGACTA CCTGTGAATA CAGTTTGCAC CTGCTTTGTT TAGGGTGTAC
  CTTTGTTTAA TGGTTCACCT TTTAGAATGT CCTGGTCTAG ACAGCACATT ATGAGATCCA
  TCAATTCTTA GCAGTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37537392	NES08887153	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	C	C	C	T
ss148134186	ENSMUSSNP4054548	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27304673					SNP	C	C	T	T	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537392	NES08887153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159429545 () rs orientation: forward

Symbol	Name	Function Class
Rr568924	regulatory region 568924	854 bp distal
Rr568925	regulatory region 568925	555 bp distal
Rr568926	regulatory region 568926	222 bp distal