rs27304670 SNP Detail

Summary

• ID
  rs27304670
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159429774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTCCT TGATATCTGT
  CTGGCAGAGT TAGCCTTTCT CTGAGAAGAC TACCTGTGAA TACAGTTTGC ACCTGCTTTG
  TTTAGGGTGT ACCTTTGTTT AATGGTTCAC CTTTTAGAAT GTCCTGGTCT AGACAGCACA
  TTATGAGATC CATCAATTCT TAGCAGTCTG TTCTTGTATA TGTGGCCATA TTTGTGCTCA
  M
  TGTGTGGGAG ATACAAGTGT TTGGGGGTAG AGAAAACTTC AAGAGAGGCA TTCTCTTGGT
  TTTGGTTTTG TTTTGTTGTT TTTCTGTGTC TCCTATTTCC ATTAGTGTTA AAGGAGGTGT
  TCGAGAGTTG CAGAGAACAC CTATAGGGAA ATGTAGATGT AAGAAAATGG GAAAACCAGA
  AAAGCACATG CATTAGCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37537389	NES08887156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27304670					SNP	C	C	C	C	C	C	C	C	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537389	NES08887156	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159429774 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	1324 bp distal
Rr568924	regulatory region 568924	1083 bp distal
Rr568925	regulatory region 568925	784 bp distal
Rr568926	regulatory region 568926	451 bp distal