rs27304669 SNP Detail

Summary

• ID
  rs27304669
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159429890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTCCTG GTCTAGACAG
  CACATTATGA GATCCATCAA TTCTTAGCAG TCTGTTCTTG TATATGTGGC CATATTTGTG
  CTCACTGTGT GGGAGATACA AGTGTTTGGG GGTAGAGAAA ACTTCAAGAG AGGCATTCTC
  TTGGTTTTGG TTTTGTTTTG TTGTTTTTCT GTGTCTCCTA TTTCCATTAG TGTTAAAGGA
  K
  GTGTTCGAGA GTTGCAGAGA ACACCTATAG GGAAATGTAG ATGTAAGAAA ATGGGAAAAC
  CAGAAAAGCA CATGCATTAG CAAGTCCCGA GTTACCAGAG TTCAGTTCTA CTGGGGACAC
  CTTGACACAG TGTTACTTCA TATGGTGGAT GAAGGCTCCC AAGGGTGTCA TGTCCATCAC
  TTCTGTCTAC TTGGAAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37537388	NES08887157	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G	G	G	T	G	T	G
ss148134200	ENSMUSSNP3920462	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27304669					SNP	T	T	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37537388	NES08887157	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159429890 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	1440 bp distal
Rr568924	regulatory region 568924	1199 bp distal
Rr568925	regulatory region 568925	900 bp distal
Rr568926	regulatory region 568926	567 bp distal