rs27303932 SNP Detail

Summary

• ID
  rs27303932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158111683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATGAATTG TAATGCAAAG ATCTGATATT CAGGATGTTT
  GCTATCTGTG ATTCCTGTGG GGGTCCCAAC CCACAGGTTG AGGATCCTTG GCTTCCATCA
  Y
  ACCACCTAGA AATAATCACT CTCAAGACCG AGGTAGACCC TCCAATCCTT CTCTACAGCA
  ATACAACGTA CACAGAGAGA TCAAGAGTGG GGAACAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
ss37543551	NES08892052	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T			C
ss148112673	ENSMUSSNP5476627	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C
ss320588367	CHEV_2_158095499	CHEVERUD	SCREENING_POP	f	SNP							T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
rs27303932					SNP	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543551	NES08892052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158111683 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Rr568716	regulatory region 568716	696 bp proximal