rs27303931 SNP Detail

Summary

• ID
  rs27303931
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158111900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGCACGC AGAGGCGTAG AAACAGCTCC ACACAGCACT
  GCACACAGAG CCCAGATGCA AATGCACACA CTGCACACAC GTGCTTCATG ATCCTGTCAC
  S
  AACACTGCTA CCCATTACTG AGCCAAAGGA GCACACTGCG GTGGACAAGT CCCAAGCTGC
  CCAGGAATCA TCTCCTGTGG CCTTCCACTG GTGGCTCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J
ss37543550	NES08892053	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C			G
ss148112678	ENSMUSSNP5781164	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				G
ss320588368	CHEV_2_158095716	CHEVERUD	SCREENING_POP	f	SNP							C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J
rs27303931					SNP	G	C	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543550	NES08892053	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158111900 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Rr568716	regulatory region 568716	479 bp proximal