rs27300457 SNP Detail

Summary

• ID
  rs27300457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163935679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATCTGC CTGCCTCTAG
  CTCCAAATGC TGGGGTTAAA GGTTTGTGCC ACCACCCTTG GCCAGTGCTT TGTAGTTTGG
  GGATATTCTG TCCTTCTCAC ACTGGTTTGA AAGCATGTTA AATTGTCTGT GTGGCATAGA
  GAGCTGACGG GCTTTTGATT GTGTGCGTAT ATAGTTATAT GAGCCAGTTT TTGGGTTTAA
  Y
  GCTTTCTGTT GCTCTGTTGT ACTTAATAAC TCTGTAACTA ATTGGAGTTT AGGATACACA
  GGTTACATAA TTCTCAAAAC ACTTTCCTTT ATGTAGCTAT CCACTTCTGG TTTAAATAAT
  CTAGTAAAAA TAACTCTGGG TATCACCATT TGAAAACATG CTGGCAAGTT TGAGGTTTCT
  GCTAAGGAAA TGATTAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37518691	NES08875686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27300457					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518691	NES08875686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163935679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330575P09Rik	RIKEN cDNA 6330575P09 gene			1398 bp downstream
Rr569556	regulatory region 569556			900 bp distal
Rr569557	regulatory region 569557			575 bp proximal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant