rs27300106 SNP Detail

Summary

• ID
  rs27300106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163703950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAACAAC CACAGCAGTG
  ACAGCTGGAG AGGGAAGGTG CCCTCCTGGC TCAAAATATT CCAAACAGCG AGTAATAACC
  TAACAGTGAG GATATCACAC TGTTGAAAAA ATGGGGTGAT GGCTAACTGT GGGCCTCAAA
  AAGGAGCCCA TCGAGAGCCC TGCTCCCTTG TTCAGGAGGC CTGCCCATCC ACAGTCCCAA
  K
  GACACTCTGA AGACCAATGG GAGAAGAGGG GCCTGTCCAC AGCCCCTTCC CTGTGTAGTG
  TCAACAGCTG CATGTGGAGA TGACAGAACT GGACAGAACC CTAAAGGGCA CTCCGGGCTT
  AGCCAGCCTG GGAATGGGAG AATTTCCAAG TAGAAGGAAT TTCTTGGTAG ATGAACCAGG
  AACCAGGTGG GACTCAATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37519626	NES08871673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27300106					SNP	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37519626	NES08871673	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163703950 () rs orientation: forward

Symbol	Name	Function Class
Rims4	regulating synaptic membrane exocytosis 4	mRNA-UTR
Rr569511	regulatory region 569511	1369 bp proximal