rs27300105 SNP Detail

Summary

• ID
  rs27300105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163704488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAATCTTC TGGAATGTAC TGGGGTCTCC CTCTCCTCAC
  AGCCCGGGGC TTGAAGAAAA AAAAAAAAGA CTACATCTGA GCTAACAGGC CTCAGGCGTG
  R
  ACACTAACTA CCCAGCTAAC CTGGACTACA CCCTACACAG CAGGGACTAG TGAGGAGGAC
  TGGCGGGCTG CTGGGCGCCT CCCAGGAGGG GTGATAGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37519625	NES08871674	PERLEGEN	MM_PANEL2	f	SNP			A	G	A	A	A		A	G	A	A	A	G	A	A
ss45318712	mCV23590071	ABI	CRAMUS_MOUSE	f	SNP	G		A					A		G
ss148214239	ENSMUSSNP1708819	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27300105					SNP	G	G	A	G	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37519625	NES08871674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163704488 () rs orientation: forward

Symbol	Name	Function Class
Rims4	regulating synaptic membrane exocytosis 4	mRNA-UTR
Rr569511	regulatory region 569511	831 bp proximal