rs27300101 SNP Detail

Summary

• ID
  rs27300101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163706620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATGTGT GCATATGTGT
  GTGTGCATGC ATGCATGGAG TGTGCATGAG ATGGCATCTG AAAGGGAGGT GGGGTGGGTC
  AGGGAACAAA TTTGGGGAGT TAGTTTATCC TTTCTCCCAT GTGTTCCAGG GATGAAACAG
  CCAAGACTCA AGAGGGACCA AACCCATGGC GACACAAGAA GTTGCAGGCG GGAGTTAGCT
  Y
  CAGTGCTTCA AATCCCCTGG GTAAGGCCCT CGAGAGTCCC TGCCCCCAAG GAACACCCCT
  CTGCGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGGAACCC CTTACCTGCA GGACTTTGCC
  CTGGGGACTC TCAGGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37519621	NES08871623	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27300101					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37519621	NES08871623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163706620 () rs orientation: forward

Symbol	Name	Function Class
Rims4	regulating synaptic membrane exocytosis 4	Intron
Rr569511	regulatory region 569511	1280 bp distal
Rr569512	regulatory region 569512	1396 bp proximal