rs27300099 SNP Detail

Summary

• ID
  rs27300099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163706989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTTTG CCCTGGGGAC
  TCTCAGGAAA CAGAAGCACC TGGTTGTACA ACGGGTCCAG TGACTTGCGG GCCACTTTGG
  TTTTCTTCTT GGCAATGCAG ACACCATTCT CCAGCAGATA GGCCTTGATA TAGGCAGCTA
  GGAACAGAGG GCAGAAGGCA GGGTTCTAGG CTGCTCCTTC AAATTGTGGG TATGAGGTGT
  W
  ACAGAGAAAG GCCAATCACC GACTTCTGGG GACCAGAGAA CCCCCAGGAG TATGGGGAGG
  GGCCACGGGG CAAATGGGTA TAGGGTGGCC AGCATACGTA ACCATGTCTG GGTAGGTACC
  ACGTGAGGTC TCAGCTGGGT GAGCCTCTTT TAGTCTTTAC TGCCTTCCCT TTCCTTAGCT
  CACTGTTTCT TCCCTCAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37519619	NES08871597	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27300099					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37519619	NES08871597	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163706989 () rs orientation: forward

Symbol	Name	Function Class
Rims4	regulating synaptic membrane exocytosis 4	Intron
Rr569511	regulatory region 569511	1649 bp distal
Rr569512	regulatory region 569512	1027 bp proximal