rs27299470 SNP Detail

Summary

• ID
  rs27299470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164492960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGGGGT TCTGGGTCCT
  GAAGATCGGA CCTGAAGTAT CTTCCCAATA CACACCACCT GACCAAGTTT GTACTCATAA
  AAAGCTTAGA TTTCAGAGCC TACAACCTCA TTGACTTCTG ATTCTAGACC CAACTTGCAG
  AATGGGAAAA CTGAGCCAGA GACCATAGGA ACCTCACGTC TGACTTTTCT GTTTGCTATC
  R
  ATAGCCACTA AAATATGCGA CCCTCTCCTC CGCCCCCGGC CCTGATCCAT ACCTTCATTG
  TCCCAAAACA TTTCTGCTCA GTCTCTCCCA TGCCCCCACT ACCTTAGCAT CGATACCTGA
  TTTCCTAAGG GGCCCTCGTT TGTTTTCTCC ATCTTTTCAG GCTCTAAGCT CTTGCAAACA
  CAAAATGGCC GTGGATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516589	NES08881736	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G
ss45346816	mCV23183352	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss148229862	ENSMUSSNP2553345	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299470					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516589	NES08881736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164492960 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	1920 bp proximal
Wfdc9	WAP four-disulfide core domain 9	Intron