rs27299466 SNP Detail

Summary

• ID
  rs27299466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164493624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGGCACA TGTGTAGAGG
  CAGGGGATAA CCTGTGAGTT ACTTCTCTCC ACGGTGCACT CTAGAGATCA ATCCCAGGTG
  ACTGGTTTCT GACCTTCTGG AAGCTGATTT TGAAAATTCA GCTCCGGCAG ATGTGCCAGG
  GCAGAGTGCT CCCATTTCTG TGCTATTGCT GCCATGGTTA CCCTTGAGGC TTCCGAGAAC
  R
  TGCAGAAACA CCAGGATCCC ATGGGCAGAT ACAGTGAGGA CGATGATCCA AGGCTTCATG
  GTAGACTGTG CGTTCACAGG AAGACAAATC CTCACCCACT GCTGTAAGGA GCAGAAAAGA
  AAGGAAGGCA AACTGGGTAA GGAGAAGGAC ACACCAGTGA GCGTGTGGAC TCCCTGTCTT
  TCCTGTCCCT CCCCTGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516585	NES08881690	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G
ss45229860	mCV23183363	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299466					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516585	NES08881690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164493624 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	1256 bp proximal
Wfdc9	WAP four-disulfide core domain 9	Coding-Synonymous