rs27299465 SNP Detail

Summary

• ID
  rs27299465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164493726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATTTTG AAAATTCAGC
  TCCGGCAGAT GTGCCAGGGC AGAGTGCTCC CATTTCTGTG CTATTGCTGC CATGGTTACC
  CTTGAGGCTT CCGAGAACGT GCAGAAACAC CAGGATCCCA TGGGCAGATA CAGTGAGGAC
  GATGATCCAA GGCTTCATGG TAGACTGTGC GTTCACAGGA AGACAAATCC TCACCCACTG
  Y
  TGTAAGGAGC AGAAAAGAAA GGAAGGCAAA CTGGGTAAGG AGAAGGACAC ACCAGTGAGC
  GTGTGGACTC CCTGTCTTTC CTGTCCCTCC CCTGACCCCC TACATGTTTA TCATCCCCAC
  CCGCCATCTT TTCCCCTCAA TCTGCTTCCT GTCTCACAAG ACACGCCCCT TCCTTTTTGA
  AATGACTTAT TTTTAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516584	NES08881691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299465					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516584	NES08881691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164493726 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	1154 bp proximal
Wfdc9	WAP four-disulfide core domain 9	Splice-Site