rs27299460 SNP Detail

Summary

• ID
  rs27299460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164494367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA AGTTTCCACA CTCTAACGCT
  Y
  TGCGCTACCA TTTCTTTCTT GTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37516579	NES08881696	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C		C	C	C		T		T	C	C		T
ss45324676	mCV23183370	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		C
ss148229907	ENSMUSSNP5110557	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C				C
ss320606584	CHEV_2_164477947	CHEVERUD	SCREENING_POP	f	SNP												T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27299460					SNP	C	C	T	T	T	T	C	T	C	C	C	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516579	NES08881696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164494367 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	513 bp proximal
Tssr21622	transcription start site region 21622	1379 bp upstream
Tssr21623	transcription start site region 21623	1393 bp upstream
Tssr21624	transcription start site region 21624	1448 bp upstream
Tssr21625	transcription start site region 21625	1530 bp upstream
Wfdc9	WAP four-disulfide core domain 9	Intron