rs27299458 SNP Detail

Summary

• ID
  rs27299458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164494558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACGCTT TGCGCTACCA
  TTTCTTTCTT GTTCAGTTAG CATCTTGGTA TCGTGCTAAT GAGCATGCGC CGCTCTGGGT
  AATGTGTAGA AGGTAGACCT GGTTGAGCTC CTGTCCTCAC CATTGGACAG AAACAGTGAT
  CTATTATCAC CCATCTCAGA GTGTTCGTCA GACACACAAG ACTGTTTGAA TTAATTGGAT
  S
  AAAGGCAAGT GTCAGATTTC AGTGATTTCA GAATTCAGTA GCCATGTGTA AGTTAGAGCC
  ACTTCACAGA CAGCTCACAG GACACGTCCA TAGTTATAAA AAACTTTTAC TGACCAATGC
  TTATCGACCT GCGTCTACCA AAAGGTCTCT TCAGGAAAGC AAGTGTAATG CCAGAGATCG
  TTAAAGGTGA AGTCTCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516577	NES08881698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27299458					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516577	NES08881698	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164494558 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	322 bp proximal
Tssr21622	transcription start site region 21622	1188 bp upstream
Tssr21623	transcription start site region 21623	1202 bp upstream
Tssr21624	transcription start site region 21624	1257 bp upstream
Tssr21625	transcription start site region 21625	1339 bp upstream
Wfdc9	WAP four-disulfide core domain 9	Intron