rs27299451 SNP Detail

Summary

• ID
  rs27299451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164495778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAC AGAGTCTTTC TGAATCATCC
  R
  AGCTCACCTA CAGGAAGGGA GTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37516570	NES08881663	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	G		G	G	G		A	A	G	G		A
ss45363424	mCV23183387	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		G
ss148229917	ENSMUSSNP4266639	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss320606587	CHEV_2_164479358	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27299451					SNP	G	G	A	A	A	A	G	A	G	G	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516570	NES08881663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164495778 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	877 bp distal
Rr569672	regulatory region 569672	1953 bp proximal
Tssr21622	transcription start site region 21622	22 bp downstream
Tssr21623	transcription start site region 21623	8 bp downstream
Tssr21624	transcription start site region 21624	37 bp upstream
Tssr21625	transcription start site region 21625	119 bp upstream
Tssr27516	transcription start site region 27516	1069 bp downstream
Tssr27517	transcription start site region 27517	1107 bp downstream
Wfdc9	WAP four-disulfide core domain 9	Intron