rs27298511 SNP Detail

Summary

• ID
  rs27298511
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166184335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTTTGAAA TTCAGTCTTT GGACTCACAC TGGACTTGGG
  GCTGGTAGTG GACAGGAAAC ATAGCCACTA GCTGTGACTT CCCAGGGTCC AGTGGGCACC
  S
  AATGTGGCCT GCTCCGTGTG GTGGCTGACT TGAAGCATGG GACACAGCCA TGCACACATT
  TTCCTCTCGG TGTTTCAGGT TTTTGTGATA CTGGGGATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511530	NES08847972	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	C		G	C	G	G	G	G	G	G	G
ss45346896	mCV22280435	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		C
ss148251292	ENSMUSSNP1475171	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G							C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27298511					SNP	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511530	NES08847972	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166184335 () rs orientation: forward

Symbol	Name	Function Class
Rr570221	regulatory region 570221	within coordinates
Rr570222	regulatory region 570222	1361 bp proximal