rs27298510 SNP Detail

Summary

• ID
  rs27298510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166184361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGAAAT GAGGCAGTCT
  AATTAAGTCT TCATATGTTG GGGTTTCTAG AACCTTCTGG AGTAGTCTTT CATTGCCTTT
  GAAATTCAGT CTTTGGACTC ACACTGGACT TGGGGCTGGT AGTGGACAGG AAACATAGCC
  ACTAGCTGTG ACTTCCCAGG GTCCAGTGGG CACCGAATGT GGCCTGCTCC GTGTGGTGGC
  Y
  GACTTGAAGC ATGGGACACA GCCATGCACA CATTTTCCTC TCGGTGTTTC AGGTTTTTGT
  GATACTGGGG ATTGGGTTCA ATTCATTTAT GTGTTCCAAG AGCCTGGAGG GTAGCCAGGT
  CCCGAGTGTG ACTTGGCAGC GTGAGATGTC CCATTAGTTC CTCGGCAAGA CACTGCTGCG
  TCATTGGGAA GGCAGCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511529	NES08847973	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27298510					SNP	T	T	T	T	T	C	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511529	NES08847973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166184361 () rs orientation: forward

Symbol	Name	Function Class
Rr570221	regulatory region 570221	within coordinates
Rr570222	regulatory region 570222	1335 bp proximal