rs27298507 SNP Detail

Summary

• ID
  rs27298507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166184843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGGCTTC CCTAGGCCTT AAGGTTTCAC TGTGAAGGCA
  TCATGGGAAA TTGGGGGTGG GGAGACCCAT GGGTTCATCT GCTCAAATCC CACCACTTTC
  Y
  AGCCATTGCG AGGCCAGGCC TCACTGGACC GCTGGACCAC AGGGTACCTG GTATAAACAG
  AGGGTAAGTG GGGCTGAAGA AATGGCTAAG CAGGTAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37511526	NES08847976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	T
ss148251298	ENSMUSSNP3711711	ENSEMBL	ENSEMBL_Sanger	f	SNP							T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27298507					SNP	C	C	C	C	T	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37511526	NES08847976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166184843 () rs orientation: forward

Symbol	Name	Function Class
Rr570221	regulatory region 570221	171 bp distal
Rr570222	regulatory region 570222	853 bp proximal