rs27298362 SNP Detail

Summary

• ID
  rs27298362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165467540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGGGTCT GCCTCTGCCC
  CTGGCTCTGG ATTGTGCTAT TTTTTGGATT TCTGCAACTT GGCATGAGCT GAAGGAGGCA
  CAGGACAATC ACAAGGGAGG TGGGACTCTT ACACGTTAGA GACAAAGTGC TTCTTATTCC
  CTCTTTTGGG GGTTGGTGGC ACTTTGTGTG TCAGTTAATG AAAGAAATAA ACTCAAAGTA
  R
  TTGAAACAAA TATAGAGACG TAATGAGCTC GCCAGAACAG AAAAGTCTGT CTCTGAAGTG
  GCCTCTCTCT TCTCCGTCAT CCTCAACTTC CCTCTGGGGC AGGCTTCCCG ATGCCTTTTG
  CTCTGTGCAT CTATCAGCCA CATTAGCAGA ATGGGGCCCC TTTGTCCTGA CAGCTCCTCC
  AAAAGTCACA GGGTGAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513682	NES08882145	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27298362					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513682	NES08882145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165467540 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	1265 bp proximal