rs27298357 SNP Detail

Summary

• ID
  rs27298357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCCAAC AAGGCCACAC
  ACCCTAATAG TGCTGCTCCC TGTGGGCCAA GCATTCAAAC ACACAAGTCT ATGGGAGTCA
  TTCCTACTCA AACTAGCACA CATACCCAAA AGTGTCAATA AAATGGCCAC AGTGTGAGGC
  TCTGACTAAG TGAACGTGGG AACAGTTGAT CCCATTTCAA AACAGGACCA TGGGCCTTAG
  R
  TGACCAGCTC CATTCAGAGG AACAACCAGA GAGAGGAGCA GAGACGTGCT CCAAGAGACA
  GAGGAGGCAC AGAGGAGACA CCACCAGCAG TGTCCCCAGG ACCAGCAAAG AAGGCGACTT
  TCCCTGAGCC TGAGGACAGC TGAGAGGGAG AAAGAGTCCG AGCCCAGGAG CAGTGTTGGT
  GTGAAGGAAC TGCCTGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37513677	NES08882120	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G		A	A	A	G		A
ss320608499	CHEV_2_165451849	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27298357					SNP	G	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513677	NES08882120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468269 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	536 bp proximal
Rr569966	regulatory region 569966	1599 bp proximal
Rr569967	regulatory region 569967	1713 bp proximal