rs27298352 SNP Detail

Summary

• ID
  rs27298352
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGCGG GGCGGGGGGC
  AGGGAAGAGG ATGGGAGCCC AGTCCAGGCG GGAGAGGACC AGGCTTGGCT GAGTGGGAGC
  ACCTTGCCGC TCATGGTTAT GCTCAAAGCC CATCCTCTAC CAGGCAAATT GAGCTCCAGA
  CACCAATTCC CAGGGCTGGT TAGATATTCT AGAATGCAGC CCGTAGGCAG GCAGCCATTT
  K
  GTCCCATCTG TCAGCAGAGG CTGCCACCAA GAAAGCAGTT CAGACTTGAG TTGGGGGCAC
  ACTCCCTGGG TGACAGCTGT GGGACTGGCC TCACTTCTCT CTCCTCGGTC CCCTCTGCTG
  GATAGCTTTG TGGAGTGGGG AAATGGTTCA GTGGGTAAAG TGCTATTCAC AAGAGTGAGC
  ACCAGAGATC GGATTCTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37513672	NES08882127	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	T		G	G	G	T		G
ss148241897	ENSMUSSNP5060834	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss320608509	CHEV_2_165452487	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27298352					SNP	T	G	G	G	G	G	G	G	G	T	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513672	NES08882127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468907 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	within coordinates
Rr569966	regulatory region 569966	961 bp proximal
Rr569967	regulatory region 569967	1075 bp proximal