rs27298351 SNP Detail

Summary

• ID
  rs27298351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTACACAC ACATATACCA
  CACACATACA TACATTATAT ATACATACAT ACACACACAC CACATATACA CACAGGCACA
  CACACAGACA CACATAGACG CACATATACA TGGGACACAC ACCACATACC AAACACCACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACTGCCCTT GTAATGACAC
  R
  TCTCTTCCAG GGCTGAGATG CGAATGAACA GAACAGCGTG GTTACAATGG CTGTCTTGCC
  TGTTTGCTAC CTTTCAATGC TCTGCATTCT CTCTCAGGAA TAGGGGACCA TGACAGCATG
  AACAGGAAGC CTCTTGGTGG CGATATGATC TTGGGTTGGT GTCCTCCCAT CCTCAGGTGC
  CTGGCAGCCG CTCGCCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513671	NES08882071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27298351					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513671	NES08882071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469856 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	809 bp distal
Rr569966	regulatory region 569966	12 bp proximal
Rr569967	regulatory region 569967	126 bp proximal
Rr569968	regulatory region 569968	1971 bp proximal