rs27298347 SNP Detail

Summary

• ID
  rs27298347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165471862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGAAG GAAGGAAGGA
  CAGAAAGGAG AGGGAGAGCA AGAGAGGGAG GGAGGAAGGG AGGGAGGGAG GGAGGGAGGG
  AGGGAGGGAG GGAGGGAAGA AGACCAGACT ATGTGGCCAG CACTCAGTCC CAGGTCTGTG
  TGCTACCCAC CCCACGGATT AAACTCTTTG TTCAGTGAGG GTGAGCAGGG CCAAGCAAAG
  R
  ATCAGAAAAG GCTGTGGACT GGCTTCTCAA GGACGGTGGG TGGGAAGAGT TCCAGGCAGC
  TGGTGGCACG GGGACCGGGG CCAGCTGTCT CCTGCTGACC ACGCCTGAGT TTCCCCCAGG
  CCTCTCACAG TGAGACCTCA ACAGCTGCCA CAGTAGAATG TGCCTGTTGG CCACAGGCGA
  CCTGCAGAGC AGGGCCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	PWD/PhJ
ss37513667	NES08882007	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	PWD/PhJ
rs27298347					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513667	NES08882007	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165471862 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569966	regulatory region 569966	1679 bp distal
Rr569967	regulatory region 569967	1859 bp distal
Rr569968	regulatory region 569968	within coordinates