rs27298346 SNP Detail

Summary

• ID
  rs27298346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165472526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTGGCC ACTCTATCAT
  GAGTAAAGAG GGCTCCTGCC CCCTCCCTGC AAGGGGCAGA AGAGCTAATG TGACCATCAC
  CCTGTGGCCT ACCAGGAGTC AAGCTCGCTG ATGGCAGAGC CACCCCTCCC CAGGTCTGTG
  GCAGCCTCCT CAGGCTGAGA GGGGGCTCTG CTTCTATGTC TGTAAAATGA TGTGGTACCC
  R
  TGACAGAACA CCCTTGAGGA ATTTAATGTA CCAATTTCAG TGGCATCCGT GAATCCCAGC
  AGGTCCTGGT AAGAGAGGCA ATTTAATAAG CAAAGGAGGC TCAGGGGGCT GGGTGGATTG
  GTTCTGTGGG TAAAAGGCTT TTCTATACAA ACATGAGGAC CTGGGTTCGC ATCCCTGGCA
  CCCACAAGAG ACAGGAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	PWD/PhJ
ss37513666	NES08882008	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	PWD/PhJ
rs27298346					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513666	NES08882008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165472526 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569968	regulatory region 569968	232 bp distal
Rr569969	regulatory region 569969	1371 bp proximal