rs27295183 SNP Detail

Summary

• ID
  rs27295183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165947107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGCAGT CTGTGAACTT
  GGGTGGGAGA ATTCATGTGC GTTTATTTTC TTTAACCTCT AACTAGCATG CCCTGCTATC
  CTGAGGGAAA GCTCCACTGA CAGAACCTGG ACGTAGGCAC CAGTGACCTA TCCCAAGACA
  GCCACCATGG ATATTTGAAA TATCACTTCT GGTACCAGAC CTGCCCACCA TCAGTGATGC
  R
  ACCTGGAAAT GTGGAAAGAG GCACACATGG CAGTTTCTAA GACACTTGGA TGCAACTGGC
  TTCCTTTGTG ACTCTGGGCA TCTTCTTCCA CAACCTACAG CAGCGTATGG AATGCGTGTG
  ACTTCTGATT ATGCTGTCAC AGGAAGGAAG CACACCTCCG CATTCATCTG CTCCCTATAG
  GAGCTGTTTT GGATAACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512506	NES08853857	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		A	G	G	G	G	G	G	G	G
ss45263948	mCV23749134	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G		G
ss148249532	ENSMUSSNP2010177	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27295183					SNP	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512506	NES08853857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165947107 () rs orientation: forward

Symbol	Name	Function Class
Rr570134	regulatory region 570134	1912 bp distal
Rr570135	regulatory region 570135	547 bp proximal
Rr570136	regulatory region 570136	1457 bp proximal
Sulf2	sulfatase 2	Intron