rs27295182 SNP Detail

Summary

• ID
  rs27295182
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165947137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATGTGC GTTTATTTTC
  TTTAACCTCT AACTAGCATG CCCTGCTATC CTGAGGGAAA GCTCCACTGA CAGAACCTGG
  ACGTAGGCAC CAGTGACCTA TCCCAAGACA GCCACCATGG ATATTTGAAA TATCACTTCT
  GGTACCAGAC CTGCCCACCA TCAGTGATGC GACCTGGAAA TGTGGAAAGA GGCACACATG
  S
  CAGTTTCTAA GACACTTGGA TGCAACTGGC TTCCTTTGTG ACTCTGGGCA TCTTCTTCCA
  CAACCTACAG CAGCGTATGG AATGCGTGTG ACTTCTGATT ATGCTGTCAC AGGAAGGAAG
  CACACCTCCG CATTCATCTG CTCCCTATAG GAGCTGTTTT GGATAACGGT GTCACCTGCA
  CGTTAACAAA TACCAACCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512505	NES08853858	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27295182					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512505	NES08853858	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165947137 () rs orientation: forward

Symbol	Name	Function Class
Rr570134	regulatory region 570134	1942 bp distal
Rr570135	regulatory region 570135	517 bp proximal
Rr570136	regulatory region 570136	1427 bp proximal
Sulf2	sulfatase 2	Intron