rs27295174 SNP Detail

Summary

• ID
  rs27295174
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165947734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CTGTTTCACT TAAGGCTGCC
  K
  CTCTCACGGT TACGGTAGGG CTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37512497	NES08853866	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		G	G	G		T	G	T		G
ss45343118	mCV23749147	ABI	CRAMUS_MOUSE	f	SNP	G				T		G
ss148249562	ENSMUSSNP5386198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						G
ss320609535	CHEV_2_165931314	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27295174					SNP	G	G	G	G	T	G	G	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512497	NES08853866	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165947734 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	within coordinates
Rr570136	regulatory region 570136	830 bp proximal
Sulf2	sulfatase 2	Intron