rs27295171 SNP Detail

Summary

• ID
  rs27295171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165948407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTGGC AGGTGTTCAA
  GTACTCATCT TTGTATAACT GGGACTGGGT AGGGAGTGGT AACTGACTCC CCAGGGAAGA
  GTGAGGATGG ATCTGGAAAG TTCTCCACAG CAGGGGAGTG GGTGAAGTGT GTTTTATACA
  GAAGCAAGTA CTAAGGTGCC AGGGCAGGGA TGACCGTACC ACAGAGAGGG TCAGTGGCCC
  R
  CGTATGAATG GAACAGAAGA GCCAGAGGCA GGAGAGACGT GAACAGGTGA GCCCGATAGA
  AGGAGCTGTG GGTTTATCTC AGGAACTCAG AACAGCCAGG GGAGGGTTTC AATCAGAGTG
  CAGCTTTTCA AGGCACCCCC TGTTGTCCTC TTTGGGGAGT AGGGGTGGTT GGCTAGTCAC
  CAGGGGAAAG AAGGGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37512494	NES08853830	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27295171					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512494	NES08853830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165948407 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	126 bp distal
Rr570136	regulatory region 570136	157 bp proximal
Rr570137	regulatory region 570137	1909 bp proximal
Sulf2	sulfatase 2	Intron