rs27295168 SNP Detail

Summary

• ID
  rs27295168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165949692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTTACA GATGGGCATT
  CGTACCCCGC CTTTTACCAG GATGCTGGGG ATCGGGCCTG GTCCTTGTTG GCTTCCCCAC
  TAAGCCATCT TCCCAGCCCT CTGCCCTCTC AACTGCAGAC GTGCAGAAGG GTGGGGCAGA
  GGGGCAGACA ATCCACAGCA GCCTTTACAG CAGGACTGGA GGATCCATCA ACTATAGGAA
  R
  TTCCCATTAC CTCAGGGAGC GTGACATATC AGACCCCTCG GAGCTGCTCT CAGAGGTATC
  TCACCAATGG CCCTTTCCTA TAATAATGAG TTTGCCGTAT TTCCTCCCAA AAGGAATTCA
  CAGTCGAAAA ATAATTTCCT ATGCCAGTCA TCTCCCAAAG TTGAAAGAAC ATTAGAACAG
  CAATCTTCAA GAAAAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37512491	NES08853809	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27295168					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512491	NES08853809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165949692 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	1411 bp distal
Rr570136	regulatory region 570136	752 bp distal
Rr570137	regulatory region 570137	624 bp proximal
Sulf2	sulfatase 2	Intron