rs27295166 SNP Detail

Summary

• ID
  rs27295166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165950123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCGGAAA CGTCTCTGGC
  ACATCCGTCA AGGAGACATG AGGTGGCAGT CAGGTGCCAG CAAGGAGACA GATTCCCTGG
  GAGGCTGCTG GTTCCCAGCG CAGGCTGGTG GGCGCTTGGT ATTTGCAATT CAAATACTGG
  TTGCCCCTGC CATCAGGGAC AGAATTTTCA GAAATAAGGA ATCTCTTGGA AAAGTTTCAC
  R
  TTCAATTATA ACAGCTTTCC TGTCAGATCT AATGCTAGGA AACTGAGCAC ATTTATAACT
  GCCAAAAACC TAAAACCAAC CAACCACCAC CCACAACAAC AACAAAAAAA ACCCCTTCCT
  TATTTATATA GAAAATAGAC TCAGATTCAA TACTCAGAAC AATAAGCATA AAATAATCCC
  CCCACACACG AATGACTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37512489	NES08853793	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27295166					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512489	NES08853793	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165950123 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	1842 bp distal
Rr570136	regulatory region 570136	1183 bp distal
Rr570137	regulatory region 570137	193 bp proximal
Sulf2	sulfatase 2	Intron