rs27295165 SNP Detail

Summary

• ID
  rs27295165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165950174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT AATGCTAGGA AACTGAGCAC
  R
  TTTATAACTG CCAAAAACCT AAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37512488	NES08853794	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	G	G		A	G	A	G
ss45243580	mCV23749421	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss148249588	ENSMUSSNP4188483	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320609538	CHEV_2_165933754	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27295165					SNP	A	A	G	G	G	G	G	A	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512488	NES08853794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165950174 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	1893 bp distal
Rr570136	regulatory region 570136	1234 bp distal
Rr570137	regulatory region 570137	142 bp proximal
Sulf2	sulfatase 2	Intron