rs27288090 SNP Detail

Summary

• ID
  rs27288090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168509869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTTTTC ACGGTGCTAT
  ATCCTAGCCG TGTGGGCCAC CGAGCCCTGG TACCTTGAAG CCACTCCAAC CTCATGCTAT
  ATGAGACACT GTCCACAAAA CCAAAAACCG TTGCTGCTAT CAGAAGCCAA GTCTTGTGGG
  CAGGAGGGAG GGAATTGAGA AGGCCAGGCA CAGAGCGAAC GTGGACAGTC AGGGTCCCAC
  Y
  GAGCAGTGAT GGAGGAAGTG GTGTGGCTAA GACCCTTCCT TCCCAGCCAG GGTTACCTCA
  TCCGGGCTGG ATGCCTGGTA CACTCGGCAG GAGTCCTCAA ACTGCTTCTC AGCCTCAGCC
  TGGTCCGTCA CACCATTGGA CTCGTACACG GGTGTCACGT TGTGGCAGAG TGCAATGGCC
  TTCACAGCCT CGTGGACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37504227	NES08854289	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27288090					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504227	NES08854289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168509869 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp9a	ATPase, class II, type 9A			Intron
				Noncoding-Transcript-Variant
Rr374244	regulatory region 374244			1004 bp upstream
Rr571055	regulatory region 571055			1444 bp proximal
Rr571056	regulatory region 571056			1938 bp proximal