rs27288084 SNP Detail

Summary

• ID
  rs27288084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168510398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC ACACACCCAT CCCATGGCTC
  R
  GTGTTCAGTC CTCTCTCTCA GTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37504220	NES08854305	PERLEGEN	MM_PANEL2	f	SNP	G		A		A	G
ss148272193	ENSMUSSNP6919388	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320610181	CHEV_2_168493978	CHEVERUD	SCREENING_POP	f	SNP				G			G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27288084					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504220	NES08854305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168510398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp9a	ATPase, class II, type 9A			Intron
				Noncoding-Transcript-Variant
Rr374244	regulatory region 374244			475 bp upstream
Rr571055	regulatory region 571055			915 bp proximal
Rr571056	regulatory region 571056			1409 bp proximal
Rr571057	regulatory region 571057			1621 bp proximal
Tssr21878	transcription start site region 21878			1723 bp upstream
Tssr27856	transcription start site region 27856			1574 bp downstream
Tssr27857	transcription start site region 27857			1610 bp downstream
Tssr27858	transcription start site region 27858			1914 bp downstream